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All tutorials have been updated for GROMACS version 2018! Lysozyme in Water: The intent of this tutorial is to give new users a basic introduction intoGROMACS git source repository and uploaded to gerrit.gromacs.org. The VOTCA manual has detailed instructions and a tutorial for SPC. The purpose of this tutorial is to help future iGEM teams improve the protein models they create. Homology modelling, while good for building initial structures Do not copy/paste commands from the PDF, it might not work. External useful link : • GROMACS tutorial: mdtutorials.com/gmx/lysozyme/index.html. Free Energy Calculations: Methane in Water. 1/19. GROMACS Tutorial. Lysozyme in water. Based on the tutorial created by Justin A. Lemkul, Ph.D.